Index
A
|
B
|
C
|
D
|
G
|
I
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
V
A
Accession (class in ncbitaxonomist.model.accession)
AccessionCache (class in ncbitaxonomist.cache.accession)
AccessionTable (class in ncbitaxonomist.db.table.accessions)
B
BaseTable (class in ncbitaxonomist.db.table.basetable)
C
cache() (ncbitaxonomist.cache.accession.AccessionCache method)
convert_from_model() (ncbitaxonomist.convert.accessiondb.DbAccessionConverter method)
(ncbitaxonomist.convert.converter.ModelConverter method)
(ncbitaxonomist.convert.ncbiaccession.NcbiAccessionConverter method)
(ncbitaxonomist.convert.taxadb.TaxaDbConverter method)
convert_to_model() (ncbitaxonomist.convert.accessiondb.DbAccessionConverter method)
(ncbitaxonomist.convert.converter.ModelConverter method)
(ncbitaxonomist.convert.ncbiaccession.NcbiAccessionConverter method)
(ncbitaxonomist.convert.taxadb.TaxaDbConverter method)
create() (ncbitaxonomist.db.table.accessions.AccessionTable method)
(ncbitaxonomist.db.table.basetable.BaseTable method)
(ncbitaxonomist.db.table.groups.GroupTable method)
(ncbitaxonomist.db.table.names.NameTable method)
(ncbitaxonomist.db.table.taxa.TaxaTable method)
create_index() (ncbitaxonomist.db.table.accessions.AccessionTable method)
(ncbitaxonomist.db.table.basetable.BaseTable method)
(ncbitaxonomist.db.table.groups.GroupTable method)
(ncbitaxonomist.db.table.names.NameTable method)
(ncbitaxonomist.db.table.taxa.TaxaTable method)
D
DataModel (class in ncbitaxonomist.model.datamodel)
DbAccessionConverter (class in ncbitaxonomist.convert.accessiondb)
delete_from_group() (ncbitaxonomist.db.table.groups.GroupTable method)
delete_group() (ncbitaxonomist.db.table.groups.GroupTable method)
G
get_accession() (ncbitaxonomist.cache.accession.AccessionCache method)
get_accessions() (ncbitaxonomist.model.accession.Accession method)
get_attributes() (ncbitaxonomist.model.accession.Accession method)
(ncbitaxonomist.model.datamodel.DataModel method)
get_lineage() (ncbitaxonomist.db.table.taxa.TaxaTable method)
get_rows() (ncbitaxonomist.db.table.accessions.AccessionTable method)
(ncbitaxonomist.db.table.names.NameTable method)
(ncbitaxonomist.db.table.taxa.TaxaTable method)
get_subtree() (ncbitaxonomist.db.table.taxa.TaxaTable method)
get_taxids() (ncbitaxonomist.db.table.taxa.TaxaTable method)
GroupParser (class in ncbitaxonomist.parser.group)
GroupTable (class in ncbitaxonomist.db.table.groups)
I
incache() (ncbitaxonomist.cache.accession.AccessionCache method)
insert() (ncbitaxonomist.db.table.accessions.AccessionTable method)
(ncbitaxonomist.db.table.basetable.BaseTable method)
(ncbitaxonomist.db.table.groups.GroupTable method)
(ncbitaxonomist.db.table.names.NameTable method)
(ncbitaxonomist.db.table.taxa.TaxaTable method)
insert_taxids() (ncbitaxonomist.db.table.taxa.TaxaTable method)
int_attribute() (in module ncbitaxonomist.model.datamodel)
is_empty() (ncbitaxonomist.cache.accession.AccessionCache method)
M
map_inattributes() (ncbitaxonomist.convert.converter.ModelConverter method)
ModelConverter (class in ncbitaxonomist.convert.converter)
N
name_to_taxid() (ncbitaxonomist.db.table.names.NameTable method)
NameTable (class in ncbitaxonomist.db.table.names)
NcbiAccessionConverter (class in ncbitaxonomist.convert.ncbiaccession)
ncbitaxonomist.cache (module)
ncbitaxonomist.cache.accession (module)
ncbitaxonomist.convert.accessiondb (module)
ncbitaxonomist.convert.converter (module)
ncbitaxonomist.convert.convertermap (module)
ncbitaxonomist.convert.ncbiaccession (module)
ncbitaxonomist.convert.taxadb (module)
ncbitaxonomist.db.table.accessions (module)
ncbitaxonomist.db.table.basetable (module)
ncbitaxonomist.db.table.groups (module)
ncbitaxonomist.db.table.names (module)
ncbitaxonomist.db.table.taxa (module)
ncbitaxonomist.log.conf (module)
ncbitaxonomist.model.accession (module)
ncbitaxonomist.model.datamodel (module)
ncbitaxonomist.parser.arguments (module)
ncbitaxonomist.parser.group (module)
new() (ncbitaxonomist.model.accession.Accession class method)
(ncbitaxonomist.model.datamodel.DataModel class method)
new_from_json() (ncbitaxonomist.model.accession.Accession class method)
(ncbitaxonomist.model.datamodel.DataModel class method)
P
parse() (in module ncbitaxonomist.parser.arguments)
(ncbitaxonomist.parser.group.GroupParser method)
parse_taxa_list() (ncbitaxonomist.parser.group.GroupParser method)
parse_taxon() (ncbitaxonomist.parser.group.GroupParser method)
R
retrieve_group() (ncbitaxonomist.db.table.groups.GroupTable method)
retrieve_names() (ncbitaxonomist.db.table.groups.GroupTable method)
S
standardize_attributes() (in module ncbitaxonomist.model.datamodel)
T
TaxaDbConverter (class in ncbitaxonomist.convert.taxadb)
TaxaTable (class in ncbitaxonomist.db.table.taxa)
taxid() (ncbitaxonomist.model.accession.Accession method)
(ncbitaxonomist.model.datamodel.DataModel method)
U
update_accessions() (ncbitaxonomist.model.accession.Accession method)
V
version() (in module ncbitaxonomist.parser.arguments)
ncbi-taxonomist
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